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CEH Bioinformatics Centre

Publications

Scientific Journal Articles and Book Chapters

  1. Field D., & Feil E, and Wilson G. (2005) Analyzing the evolution of infectious bacteria (in preparation book chapter for Bioinformatics: From Genomes to Therapies.)
  2. Field, D., Tiwari, B, and Snape J (2005) Bioinformatics and Data Management support for Environmental Genomics. PLoS (summitted as invited community piece).
  3. Wilson, G & Feil E, and Field D. (2005) Orphans as taxonomically restricted and ecologically important genes. Microbiology (in press).
  4. Field D., & Feil E, and Wilson G. (2005) Databases and software for the comparative genomic study of collections of prokaryotic genomes. Microbiology (submitted as an invited review).
  5. Hughes J. & Field D. (2005) Ecological Perspectives on our complete genome collection. Ecology Letters (submitted as an invited review).
  6. Field D, & Hughes J (2005). Cataloguing our current genome collection. Microbiology. Citation
  7. Dawn Field, Richard Moxon, and Jennifer Hughes (2003) Using the genome to understand pathogenicity Genomics, Proteomics, and Clinical Bacteriology, Editor Neil Woodford (in press).
  8. Molbak, L., D. Ussery, A. Tett, S. Turner, K. Wall, M. Bailey and D. Field. (2003) "The Plasmid Genome Database". Microbiology. 149:3043-5 Citation
  9. Alison J. Cody, Dawn Field , Edward J. Feil, Suzanna Stringer, Mary Deadman, Anthony Tsolaki, Brett Gratz, Valérie Bouchet, Richard Goldstein, Derek W. Hood & E. Richard Moxon (2003) High rates of recombination in otitis media isolates of non-typeable Haemophilus influenzae. Infect Genet Evol. 3:57-66. Citation
  10. Udalova, I., R. Mott, D. Field, & D. Kwiatkowski (2002) Quantitative prediction of NF kB DNA protein interactions PNAS Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8167-72. Citation
  11. Bayliss, C. D., D. Field, &. E.R. Moxon. 2001. The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis. J. Clin. Inf. J. Clin Invest. 107:657-62 Citation
  12. Spiers, A.J., D. Field, M. Bailey, & P. Rainey. 2001. Notes on Designing a Partial Genomic Database: The PfSBW25 Encyclopaedia, a sequence database for Pseudomonas fluorescens SBW25. Microbiol. 147:247-249.
  13. Metzgar D., E Thomas , C. Davis, D Field & C Wills. 2001. The microsatellites of Escherichia coli: rapidly evolving repetitive DNAs in a non-pathogenic prokaryote. Mol Microbiol. 39:183-90.
  14. Bayliss, C. D., D. Field, X. de Bolle &. E.R. Moxon. 2000. The generation of diversity by Haemophilus influenzae. Trends in Microbiology 8:435-6.
  15. X. De Bolle, C.D. Bayliss, D. Field, T. van de Ven, N.J. Saunders, D.W. Hood, and E.R. Moxon. 2000. The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases. Mol Microbiol. 35:211-22.
  16. Field, D., D. Hood, & R.E. Moxon. 1999. Contribution of genomics to bacterial pathogenesis. Current Opionion in Genetics and Development. 9:700-3.
  17. Davis, C., D. Field, D. Metzgar, R. Saiz, P. Morin, I. L. Smith, S. A. Spector, & C. Wills. 1999. Numerous Length Polymorphisms at Short Tandem Repeats in Human Cytomegalovirus. Journal of Virology , 73:6265-70.
  18. Field D, M. O. Magnasco, E. R. Moxon, D. Metzgar, M. Tanaka, C. Wills, & D. S. Thaler. 1998. Contingency loci, mutator alleles and their interactions: synergistic strategies for microbial evolution and adaptation in pathogenesis. Annals of the New York Academy of Sciences , 870:378-382.
  19. Field, D & C. Wills. 1998. Abundant microsatellite polymorphism in S. cerevisiae, and the different distributions of microsatellites in prokaryotes and eukaryotes, result from strong mutation pressures and a variety of selective forces. Proceedings of the National Academy of Sciences of the United States of America, 95:1647-52
  20. Metzgar, D., Field, D. Haubrich, R., & C. Wills. 1998 Sequence analysis of a compound coding-region microsatellite in Candida albicans resolves homoplasies and provides a high resolution tool for genotyping. Fems Immunology and Medical Microbiology, Feb, 20:103-9.
  21. Metzgar D; A. van Belkum, D. Field, R. Haubrich, & C. Wills. 1998. Random amplification of polymorphic DNA and microsatellite genotyping of pre- and posttreatment isolates of Candida spp. from human immunodeficiency virus-infected patients on different fluconazole regimens. Journal of Clinical Microbiology 36:2308-13.
  22. Field, D., L. Chemnick & O. Ryder. 1998. Microsatellite-based paternity determination in captive gorillas and orangutans. Primates. 39:199-209.
  23. Field, D., L. Eggert, D. Metzgar, R. Rose & C. Wills. 1996. Use of polymorphic short and clustered coding-region microsatellites to distinguish strains of Candida albicans. Fems Immunology and Medical Microbiology, 15:73-9.
  24. Field, D. & C. Wills. 1996. Long, polymorphic microsatellites in simple organisms. Proc. Roy. Soc. London B 263: 209-215.
  25. Srikwan, S., D. Field & D.S. Woodruff. 1996. Noninvasive genotyping of free-ranging rodents with heterologous PCR primer pairs for hypervariable nuclear microsatellite loci. J. Science Society of Thailand 22: 267-274
  26. Broadwater, S, J. Scott, D. Field and B. Saunders. 1993. An ultrastructural study of cell division in the coralline red alga Bosienella orbigniance. Canadian Journal of Botany 71:434-

Popular Science and Computing Articles

Tiwari B. and Field D. (2005) A Bioinformatics Playground. LinuxUser and Developer. 46: 110-115.