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Molecular Evolution and Bioinformatics Section 

Msatfinder home | Msatfinder on-line v.2.0 | Small Genomes Microsatellite Database
Sample fasta file |  Sample output | Msatfinder v.1.0

Click on the help icons alongside each option for more information.

 Choose which microsatellite motifs to search for:






 Set thresholds (minimum 3 repeat units):
mono
di
tri
tetra
penta
hexa

 Engine for finding perfect repeats:




 

 Select a sequence file

 ...or paste a sequence

Accepted formats:
GenBank, EMBL, Swissprot, FASTA, ASCII.

 Compress results into:

 Email:

Required if file is larger than 7 megabytes

    
08/10/07 - fixed bug in implementing markov thresholds
01/10/07 - can now deal with long stretches of incomplete sequencing (eg several hundred Ns)