This interface allows access to 'GenomeBank' reports for each genome in the GenomeMine. Retrieve a record by entering an apprioriate identifier (currently, NCBI Refseq Numbers and CMR aliases for bacteria are recognized). All information stored for a given genome will be displayed along with links to external resources. GenomeBank reports contain "core" information automatically extracted or calculated from the corresponding genome annotation file. If there is also curated data available for a given genome, a link will be displayed at the top of the report giving access to this data.

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Refseq or Locus	Species or Strain	Annotation Notes	Common Name	Genbank Division	Strand	Search Google	Search Pubmed	Search Plasmid Genome Database	Nucleic Acid	Type of Chromosome	Taxonomy Link	NCBI Taxonomy	Genome Size	ORFs	Percent Coding	GC	A	C	G	T

Description of curated genomebank fields

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Refseq or Locus	Strain name	Notable Features	Search Google	Search Pubmed	TIGR CMR	Number of chromosomes	Type of Chromosome	Genome Map	Year of Publication	Pubmed	Order of Publication	Number of Megaplasmids	Bacteriophage	Plasmids		Taxonomy for index strain	Taxonomy	Domain	Division	Subdivision	Family	Genus	Species	Subspecies	serotype	biotype	strain		Genomic Features for index strain	Genome Size	GC	ORFs	Orphans	rRNA	tRNA	Percent Coding	Average Gene Size	pseudogenes	Growth	doubling time in culture		Morphology	shape	stain	width	length	motile		Habitat	primary habitat	primary habitat	primary habitat	vector	humans	extremophile	optimal growth temperature	optimal growth pH	environmental breadth	interaction	obligate	intracellular		Guild	oxygen	energy	carbon	notes on metabolism
NC_000854	Aeropyrum pernix	aerobic hyper-thermophilic crenarchaeon	Google	Pubmed	Genome Page: http://www.tigr.org/tigr-scripts/CMR2/GenomePage3.spl?database=ntap01 Genome Menu: http://www.tigr.org/tigr-scripts/CMR2/GenomeTabs.spl?database=ntap01 (Alias: ntap01, ID: 103)	1	circular	142	1999	Abstract	20	0	0	0			taxid Archaea;Crenarchaeota;Aeropyrum.	Archaea	Crenarchaeota		not assigned at family level	Aeropyrum	pernix				K1			1669695		2694	1538	1	47	89.12	237			200 min			C	negative	1		Motile			marine hydrothermal vents				No	hyperthermophilic	92	7	2	F	Free-living	No			aerobic	organic	organic

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idx	NC_Chr1	NC_Chr2	D1	D2	D3	D4
20	NC_000854		489	41	492	41

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Chr1NC	species_name	contingency_loci	evidence_type_for_CL	evidence_for_CL	date_of_publication	Monos	Dis	Tris	Tetras	Pentas	Hexas	Total_msats
NC_000854	Aeropyrum pernix	No			1999-04-30	0	0	0	0	0	0	0

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idx	genome	total	mono	di	tri	tetra	penta	hexa
9	NC_000854	0	0	0	0	0	0	0

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idx	Definition	Accession	Ori	Ter	bp_genome	bp_spacer	bp_rRNA	bp_tRNA	bp_RNA	GC_genome	GC_spacer	GC_rRNA	GC_tRNA	GC_RNA	Hbu_genome	Hbu_spacer	Hbu_rRNA	Hbu_tRNA	Hbu_RNA	No_rRNA	No_tRNA
2	Aeropyrum pernix K1_ complete genome.	NC_000854	0	1385500	112500	1669695	199320	6254	4333	1000.0000000	0.5630000	0.5080000	0.6200000	0.7240000	0.6630000	1.9880000	2.0000000	1.9500000	1.8500000	1	5

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chr1nc	chr2nc	domain	division	subdivision	family	genus	species	subspecies	serotype	biotype_biovar	strain	idx
NC_000854		Archaea	Crenarchaeota		not assigned at family level	Aeropyrum	pernix				K1	20

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id	goldstamp	nc_number	organism	division	taxlink	genome_project	genome_size	orfs	genome_map	gc_content	publication	publication_date	status	contact_name	contact_url	contact_email	availability
327	Gc00022	NC_000854	Aeropyrum pernix K1	Archaea	http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=272557&lvl=4&lin=f&keep=1&srchmode=1&unlock		1669000	2620	http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/altik?gi=142&db=Genome	67	http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10382966&dopt=Abstract	1999-04-30	complete	Kawarabayasi Y		kawarabayasi.yutaka@aist.go.jp	Public

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idx	definition	Accession	No_All	ndc	Agca	Agcc	Agcg	Agct	Ctgc	Ctgt	Dgac	Dgat	Egaa	Egag	Fttc	Fttt	Ggga	Gggc	Gggg	Gggt	Hcac	Hcat	Iata	Iatc	Iatt	Kaaa	Kaag	Lcta	Lctc	Lctg	Lctt	Ltta	Lttg	Matg	Naac	Naat	Pcca	Pccc	Pccg	Pcct	Qcaa	Qcag	Raga	Ragg	Rcga	Rcgc	Rcgg	Rcgt	Sagc	Sagt	Stca	Stcc	Stcg	Stct	Taca	Tacc	Tacg	Tact	Vgta	Vgtc	Vgtg	Vgtt	Wtga	Wtgg	Ytac	Ytat	Laa	Hcu	Dcu	Dsyn	Hs	Hw	Ew	enc	cbi	icdi	Haau	mmw	gravy	aroma	acidic	basic	neutral	polar	Hbu	a_c	c_c	g_c	t_c	ryr	gac	gcc	gtc	gcs	tas	Hbu1	a_c1	c_c1	g_c1	t_c1	ryr1	gac1	gcc1	gtc1	gcs1	tas1	Hbu2	a_c2	c_c2	g_c2	t_c2	ryr2	gac2	gcc2	gtc2	gcs2	tas2	Hbu3	a_c3	c_c3	g_c3	t_c3	ryr3	gac3	gcc3	gtc3	gcs3	tas3	aa	ac	ag	at	ca	cc	cg	ct	ga	gc	gg	gt	ta	tc	tg	tt	aa12	ac12	ag12	at12	ca12	cc12	cg12	ct12	ga12	gc12	gg12	gt12	ta12	tc12	tg12	tt12	aa23	ac23	ag23	at23	ca23	cc23	cg23	ct23	ga23	gc23	gg23	gt23	ta23	tc23	tg23	tt23	aa31	ac31	ag31	at31	ca31	cc31	cg31	ct31	ga31	gc31	gg31	gt31	ta31	tc31	tg31	tt31
2	Aeropyrum pernix K1_ complete genome.	NC_000854	0	1840	61	7438	18895	10767	12767	2731	1264	14702	7051	5731	31826	11851	3022	6395	17340	13670	8028	5860	2491	18513	5733	4295	4336	16032	10124	18301	15138	7985	2306	3357	9545	8050	2129	4063	11323	6329	6599	1387	7743	5934	26003	1002	2608	3046	1511	12887	3127	3175	6527	4662	3941	5263	7345	5433	4408	7550	11896	15251	11926	0	6905	12093	5858	1000.0000000	5.5910001	0.2086000	0.1293000	24.3069992	1.5517000	0.8301000	46.2400017	0.3763000	0.1894000	4.0393000	127.5500031	0.0062000	0.0774000	0.1155000	0.1340000	0.1831000	0.4326000	1.9788001	0.2256000	0.2549000	0.3177000	0.2018000	1.1897000	0.5433000	0.5726000	0.5195000	0.1098000	-0.0557000	1.8945000	0.2708000	0.2055000	0.3919000	0.1318000	1.9646000	0.6627000	0.5974000	0.5237000	0.3121000	-0.3451000	1.9877000	0.2440000	0.2316000	0.2190000	0.3054000	0.8622000	0.4630000	0.4506000	0.5244000	-0.0280000	0.1117000	1.9150000	0.1621000	0.3275000	0.3422000	0.1683000	1.0172000	0.5043000	0.6697000	0.5105000	0.0220000	0.0188000	0.7970000	0.8670000	1.2900000	0.9380000	0.9250000	1.1410000	0.7030000	1.3730000	1.0760000	0.9700000	1.0920000	0.8080000	1.2010000	1.0210000	0.9020000	0.9020000	0.9000000	0.6970000	1.5750000	0.8970000	0.6790000	1.1590000	0.3530000	1.6000000	1.2079999	1.0700001	1.0310000	0.7590000	1.0870000	1.1670001	0.7350000	0.9930000	0.5640000	0.9920000	1.2970001	0.8310000	1.0340000	1.1320000	0.6680000	1.3850000	0.7310000	0.9660000	1.2900000	0.7360000	1.5150000	0.9310000	0.8070000	1.0319999	0.9110000	0.7960000	1.1930000	0.9250000	0.9780000	1.2070000	0.7950000	1.3300000	0.9700000	0.9830000	1.0870000	0.8300000	1.1890000	0.8320000	1.0340000

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idx	Definition	Accession	No_Rp	ndc	Agca	Agcc	Agcg	Agct	Ctgc	Ctgt	Dgac	Dgat	Egaa	Egag	Fttc	Fttt	Ggga	Gggc	Gggg	Gggt	Hcac	Hcat	Iata	Iatc	Iatt	Kaaa	Kaag	Lcta	Lctc	Lctg	Lctt	Ltta	Lttg	Matg	Naac	Naat	Pcca	Pccc	Pccg	Pcct	Qcaa	Qcag	Raga	Ragg	Rcga	Rcgc	Rcgg	Rcgt	Sagc	Sagt	Stca	Stcc	Stcg	Stct	Taca	Tacc	Tacg	Tact	Vgta	Vgtc	Vgtg	Vgtt	Wtga	Wtgg	Ytac	Ytat	Laa	Hcu	Dcu	Dsyn	Hs	Hw	Ew	enc	cbi	icdi	Haau	mmw	gravy	aroma	acidic	basic	neutral	polar	Hbu	a_c	c_c	g_c	t_c	ryr	gac	gcc	gtc	gcs	tas	Hbu1	a_c1	c_c1	g_c1	t_c1	ryr1	gac1	gcc1	gtc1	gcs1	tas1	Hbu2	a_c2	c_c2	g_c2	t_c2	ryr2	gac2	gcc2	gtc2	gcs2	tas2	Hbu3	a_c3	c_c3	g_c3	t_c3	ryr3	gac3	gcc3	gtc3	gcs3	tas3	aa	ac	ag	at	ca	cc	cg	ct	ga	gc	gg	gt	ta	tc	tg	tt	aa12	ac12	ag12	at12	ca12	cc12	cg12	ct12	ga12	gc12	gg12	gt12	ta12	tc12	tg12	tt12	aa23	ac23	ag23	at23	ca23	cc23	cg23	ct23	ga23	gc23	gg23	gt23	ta23	tc23	tg23	tt23	aa31	ac31	ag31	at31	ca31	cc31	cg31	ct31	ga31	gc31	gg31	gt31	ta31	tc31	tg31	tt31
2	Aeropyrum pernix K1_ complete genome.	NC_000854	0	69	61	165	386	184	234	60	9	306	110	96	759	236	34	122	394	236	184	137	45	444	103	75	103	697	195	330	304	134	15	42	219	184	40	80	247	158	119	15	238	154	882	15	58	40	27	251	48	41	80	51	42	91	161	130	70	175	276	318	253	0	128	241	96	1000.0000000	5.4102001	0.2998000	0.2126000	21.9880009	1.3774000	0.7418000	42.0400009	0.4779000	0.3000000	4.0328002	130.0800018	-0.3323000	0.0664000	0.1148000	0.1950000	0.1607000	0.4705000	1.9605000	0.2539000	0.2359000	0.3371000	0.1731000	1.4450001	0.5910000	0.5730000	0.5102000	0.1767000	-0.1892000	1.8436000	0.3300000	0.1935000	0.3793000	0.0971000	2.4402001	0.7093000	0.5729000	0.4765000	0.3243000	-0.5452000	1.9870000	0.2771000	0.2023000	0.2357000	0.2849000	1.0525000	0.5128000	0.4380000	0.5206000	0.0761000	0.0138000	1.8631999	0.1546000	0.3117000	0.3963000	0.1373000	1.2268000	0.5509000	0.7081000	0.5337000	0.1194000	-0.0591000	0.8010000	0.7910000	1.3620000	0.8710000	0.9580000	1.2359999	0.6750000	1.3740000	1.0680000	0.9860000	1.0250000	0.8700000	1.2170000	1.0260000	0.8560000	0.9270000	1.0120000	0.6120000	1.5510000	0.8080000	0.7330000	1.3940001	0.2770000	1.5779999	1.0920000	1.1410000	0.9460000	0.8550000	1.1310000	0.9840000	0.7780000	1.0680000	0.4510000	0.9080000	1.3940001	0.6910000	1.0890000	1.2520000	0.5890000	1.5120000	0.7220000	0.9380000	1.2440000	0.7480000	1.7010000	0.9610000	0.7070000	1.1450000	0.8460000	0.7530000	1.2990000	0.8490000	0.9620000	1.1930000	0.8580000	1.2970001	1.0190001	1.0180000	0.9910000	0.9320000	1.2190000	0.7770000	1.0050000